Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1512PFAM: Rhomboid family protein; KEGG: cth:Cthe_0259 rhomboid-like protein. (191 aa)    
Predicted Functional Partners:
Cphy_1511
KEGG: lme:LEUM_1913 hypothetical protein.
       0.648
Cphy_2939
PFAM: band 7 protein; KEGG: fnu:FN1549 stomatin like protein.
   
 0.537
Cphy_3821
Band 7 protein; HflC and HflK could regulate a protease.
   
 0.537
Cphy_3822
HflK protein; HflC and HflK could encode or regulate a protease.
   
 0.537
Cphy_2601
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cno:NT01CX_1657 5-formyltetrahydrofolate cyclo-ligase family protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.506
Cphy_1513
PFAM: regulatory protein TetR; KEGG: cac:CAC1668 transcriptional regulator, AcrR family.
       0.465
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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