STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1532PFAM: Domain of unknown function DUF1801; KEGG: rci:RCIX1712 hypothetical protein. (113 aa)    
Predicted Functional Partners:
Cphy_1648
PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1231 hypothetical protein.
    0.722
Cphy_1531
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2542 binding-protein-dependent transport systems inner membrane component.
       0.484
Cphy_1530
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2543 binding-protein-dependent transport systems inner membrane component.
       0.475
Cphy_1533
KEGG: cdf:CD2540 NADH oxidase.
       0.465
Cphy_1402
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bce:BC2431 PhnB protein.
 
     0.450
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.