STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1586PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gtn:GTNG_1800 L-arabinose transport, ATP binding protein. (513 aa)    
Predicted Functional Partners:
Cphy_1585
KEGG: amt:Amet_3799 putative solute-binding component of ABC transporter.
 
 0.989
Cphy_1587
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: amt:Amet_3797 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.953
Cphy_0581
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc03000 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.866
Cphy_1133
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ctc:CTC00906 ribose transport system permease protein rbsC.
 
 
 0.858
Cphy_0582
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ent:Ent638_4073 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.852
Cphy_3278
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0163 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.849
Cphy_2011
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vei:Veis_1087 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.847
Cphy_1584
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0289 Periplasmic sugar-binding proteins.
 
  
 0.840
Cphy_1132
KEGG: rle:RL0518 putative solute-binding component of ABC transporter.
 
 
 0.738
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.728
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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