STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1587Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: amt:Amet_3797 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family. (392 aa)    
Predicted Functional Partners:
Cphy_1586
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gtn:GTNG_1800 L-arabinose transport, ATP binding protein.
  
 0.954
Cphy_1585
KEGG: amt:Amet_3799 putative solute-binding component of ABC transporter.
  
 0.951
Cphy_1584
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0289 Periplasmic sugar-binding proteins.
  
 0.881
Cphy_1134
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
  
 0.716
Cphy_0580
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
  
 0.693
Cphy_1132
KEGG: rle:RL0518 putative solute-binding component of ABC transporter.
  
 0.685
Cphy_3279
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
  
 0.674
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 0.667
Cphy_3277
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0765 Periplasmic sugar-binding proteins.
  
 0.612
Cphy_2009
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein.
  
 0.606
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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