Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1590Transcriptional regulator, XRE family; KEGG: bcy:Bcer98_0514 helix-turn-helix domain protein. (456 aa)    
Predicted Functional Partners:
Cphy_1591
PFAM: major facilitator superfamily MFS_1; KEGG: tme:Tmel_0369 major facilitator superfamily MFS_1.
 
   
 0.873
Cphy_3411
KEGG: mma:MM_2848 hypothetical protein.
  
     0.608
Cphy_3501
PFAM: glycosyl transferase group 1; KEGG: eba:ebA5884 hypothetical protein.
  
     0.528
Cphy_1589
KEGG: bce:BC0396 hypothetical protein.
       0.465
Cphy_3134
PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1157 acetyltransferase, GNAT family.
  
    0.433
Cphy_3335
PFAM: aminoglycoside phosphotransferase; KEGG: cac:CAC2572 possible aminoglycoside phosphotransferase (protein kinase related), diverged.
  
     0.416
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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