STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1634PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bld:BLi00349 ABC-2 type transport system ATP-binding protein. (297 aa)    
Predicted Functional Partners:
Cphy_1635
KEGG: bca:BCE_1989 membrane protein, putative.
 
 
 0.963
Cphy_1633
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ckl:CKL_0067 hypothetical protein.
 
     0.898
Cphy_1224
PFAM: ABC-2 type transporter; KEGG: blo:BL0900 hypothetical protein.
 
    0.538
Cphy_1223
PFAM: ABC-2 type transporter; KEGG: tde:TDE0696 membrane protein, putative.
 
  
 0.515
Cphy_1835
KEGG: bha:BH1004 putative ABC-2 type transport system permease protein.
 
 
 0.510
Cphy_1279
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH.
  
    0.422
Cphy_2235
PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0265 transcriptional regulator, GntR family.
  
    0.422
Cphy_1632
KEGG: ctc:CTC02460 ATP-dependent DNA helicase rep.
       0.421
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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