STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1635KEGG: bca:BCE_1989 membrane protein, putative. (266 aa)    
Predicted Functional Partners:
Cphy_1634
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bld:BLi00349 ABC-2 type transport system ATP-binding protein.
 
 
 0.963
Cphy_1633
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ckl:CKL_0067 hypothetical protein.
 
     0.923
Cphy_1225
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_1042 probable ATP binding protein of ABC transporter.
 
 
 0.524
Cphy_1224
PFAM: ABC-2 type transporter; KEGG: blo:BL0900 hypothetical protein.
  
  
 0.520
Cphy_1432
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ckl:CKL_0584 hypothetical protein.
  
    0.477
Cphy_1223
PFAM: ABC-2 type transporter; KEGG: tde:TDE0696 membrane protein, putative.
 
  
 0.476
Cphy_1648
PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1231 hypothetical protein.
  
     0.464
Cphy_3904
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0384 predicted ABC transporter, ATPase component.
 
 
 0.444
Cphy_3008
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK4584 ABC transporter, ATP-binding protein.
 
 
 0.432
Cphy_1632
KEGG: ctc:CTC02460 ATP-dependent DNA helicase rep.
       0.421
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.