STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1640PFAM: glycoside hydrolase family 12; KEGG: sma:SAV2571 hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family. (241 aa)    
Predicted Functional Partners:
Cphy_3202
Cellulase; PFAM: glycoside hydrolase family 5; cellulose-binding family II; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B).
 
 
 0.782
Cphy_2105
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; KEGG: bay:RBAM_033790 XynA; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.764
Cphy_1510
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: cth:Cthe_0912 glycoside hydrolase, family 10.
 
 
 
 0.756
Cphy_2108
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase.
 
 
 
 0.741
Cphy_1775
S-layer domain protein; PFAM: coagulation factor 5/8 type domain protein; S-layer domain protein; KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein.
  
   
 0.738
Cphy_3586
Arabinogalactan endo-1,4-beta-galactosidase; PFAM: Ricin B lectin; glycosyl hydrolase 53 domain protein; KEGG: eca:ECA0852 putative exported plant proteoglycan hydrolase.
 
    0.738
Cphy_3010
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: csc:Csac_2408 endo-1,4-beta-xylanase.
 
 
 
 0.735
Cphy_3368
PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48.
 
 
 0.720
Cphy_0624
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: cth:Cthe_1838 glycoside hydrolase, family 10.
 
 
 
 0.719
Cphy_2919
PFAM: protein of unknown function DUF1565; KEGG: sde:Sde_2946 hypothetical protein.
 
   
 0.701
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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