STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1642KEGG: ani:AN4890.2 hypothetical protein. (325 aa)    
Predicted Functional Partners:
Cphy_1775
S-layer domain protein; PFAM: coagulation factor 5/8 type domain protein; S-layer domain protein; KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein.
  
     0.684
Cphy_3309
PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase.
  
     0.665
Cphy_1882
SMART: Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein.
  
     0.625
Cphy_1873
PFAM: Carbohydrate binding family 6; APHP domain protein; SMART: cellulose binding type IV; Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein.
  
     0.586
Cphy_1308
PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein.
  
     0.566
Cphy_3778
PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein, putative.
  
     0.526
Cphy_2675
PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein, putative.
  
     0.522
Cphy_3779
KEGG: tde:TDE0486 membrane protein, putative.
  
     0.519
Cphy_3317
PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV1727 putative sugar-binding lipoprotein precursor.
  
     0.518
Cphy_2674
KEGG: tde:TDE0486 membrane protein, putative.
  
     0.492
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.