STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1649KEGG: cbe:Cbei_4140 hypothetical protein. (55 aa)    
Predicted Functional Partners:
Cphy_1650
KEGG: cbf:CLI_1187 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
 
     0.909
Cphy_1822
PFAM: GCN5-related N-acetyltransferase; KEGG: esa:ESA_02128 hypothetical protein.
  
     0.538
Cphy_1648
PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1231 hypothetical protein.
       0.517
Cphy_1778
KEGG: dsy:DSY1202 hypothetical protein.
  
     0.499
Cphy_3237
KEGG: btk:BT9727_4626 hypothetical protein.
  
     0.468
Cphy_1545
PFAM: protein of unknown function DUF503; KEGG: cbf:CLI_2969 hypothetical protein.
  
     0.467
Cphy_3858
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0682 extracellular solute-binding protein, family 1.
  
     0.461
Cphy_0722
PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_3713 protein of unknown function DUF1540.
  
     0.443
Cphy_1777
KEGG: swo:Swol_1838 hypothetical protein.
  
     0.436
Cphy_1652
Peptidoglycan-binding LysM; PFAM: glycoside hydrolase family 18; Peptidoglycan-binding LysM; SMART: chitinase II; KEGG: cno:NT01CX_1510 spore peptidogylcan hydrolase.
 
     0.426
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.