Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1651PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_0838 major facilitator family transporter. (422 aa)    
Predicted Functional Partners:
Cphy_0200
KEGG: cac:CAC2610 L-fucose isomerase related protein.
 
  
 0.553
Cphy_0744
KEGG: csc:Csac_0633 ATP-dependent endonuclease of the OLD family-like protein.
  
     0.510
Cphy_1515
KEGG: cbe:Cbei_4414 hypothetical protein.
  
     0.436
Cphy_1652
Peptidoglycan-binding LysM; PFAM: glycoside hydrolase family 18; Peptidoglycan-binding LysM; SMART: chitinase II; KEGG: cno:NT01CX_1510 spore peptidogylcan hydrolase.
       0.416
Cphy_1649
KEGG: cbe:Cbei_4140 hypothetical protein.
       0.415
Cphy_1650
KEGG: cbf:CLI_1187 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.415
Cphy_3858
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0682 extracellular solute-binding protein, family 1.
  
     0.411
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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