STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1652Peptidoglycan-binding LysM; PFAM: glycoside hydrolase family 18; Peptidoglycan-binding LysM; SMART: chitinase II; KEGG: cno:NT01CX_1510 spore peptidogylcan hydrolase. (423 aa)    
Predicted Functional Partners:
Cphy_2289
PFAM: peptidase M23B; KEGG: bcl:ABC2951 metalloendopeptidase.
  
     0.578
Cphy_2470
Peptidase U4 sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.555
Cphy_1248
TIGRFAM: dipicolinic acid synthetase, B subunit; PFAM: flavoprotein; KEGG: cdf:CD2967 dipicolinate synthase, B chain.
  
    0.467
Cphy_1777
KEGG: swo:Swol_1838 hypothetical protein.
  
     0.463
Cphy_1249
KEGG: cdf:CD2968 dipicolinate synthase, A chain.
  
    0.446
Cphy_1649
KEGG: cbe:Cbei_4140 hypothetical protein.
 
     0.426
Cphy_2523
Hypothetical protein; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB.
  
     0.421
Cphy_1651
PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_0838 major facilitator family transporter.
       0.416
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.