STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1656PFAM: DSBA oxidoreductase; KEGG: efa:EF1088 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Cphy_0206
PFAM: arsenate reductase and related; KEGG: ctc:CTC01181 arsenate reductase; Belongs to the ArsC family.
  
 
 0.815
Cphy_0726
PFAM: arsenate reductase and related; KEGG: cno:NT01CX_2298 arsenate reductase-like protein; Belongs to the ArsC family.
   
 
 0.813
Cphy_1114
PFAM: NADPH-dependent FMN reductase; KEGG: dsy:DSY1214 hypothetical protein.
 
    0.565
Cphy_1655
KEGG: ckl:CKL_0533 hypothetical protein.
       0.461
Cphy_0995
KEGG: dsy:DSY1051 hypothetical protein.
  
    0.429
Cphy_2710
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.408
Cphy_2719
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC.
    
   0.408
Cphy_1657
KEGG: bth:BT_2376 hypothetical protein.
       0.405
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.