STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1657KEGG: bth:BT_2376 hypothetical protein. (254 aa)    
Predicted Functional Partners:
Cphy_2889
KEGG: cth:Cthe_2151 hypothetical protein.
  
     0.576
Cphy_2265
PFAM: extracellular solute-binding protein family 1; KEGG: cth:Cthe_1046 extracellular solute-binding protein, family 1.
  
     0.574
Cphy_3204
PFAM: GCN5-related N-acetyltransferase; KEGG: lca:LSEI_2784 predicted acetyltransferase.
  
     0.471
Cphy_2886
Membrane protein-like protein; KEGG: mba:Mbar_A0504 hypothetical protein.
  
     0.434
Cphy_2269
KEGG: csc:Csac_2415 hypothetical protein.
  
     0.425
Cphy_1658
PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pth:PTH_2686 predicted oxidoreductases.
       0.411
Cphy_1656
PFAM: DSBA oxidoreductase; KEGG: efa:EF1088 hypothetical protein.
       0.405
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.