STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cphy_1658PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pth:PTH_2686 predicted oxidoreductases. (370 aa)    
Predicted Functional Partners:
Cphy_2027
PFAM: aldo/keto reductase; KEGG: sen:SACE_0624 oxidoreductase, aldo/keto reductase family.
 
     0.653
Cphy_1659
PFAM: alpha/beta hydrolase fold; KEGG: cbf:CLI_0921 non-haem haloperoxidase family protein.
 
     0.538
Cphy_1660
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cbe:Cbei_3316 NADH:flavin oxidoreductase/NADH oxidase.
       0.448
Cphy_1657
KEGG: bth:BT_2376 hypothetical protein.
       0.411
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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