STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Cphy_1684Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (444 aa)    
Predicted Functional Partners:
Cphy_2906
TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein; KEGG: amt:Amet_2454 nitrogen-fixing NifU domain protein.
  
 0.951
Cphy_0254
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: tte:TTE2220 thioredoxin reductase.
   
 
  0.911
Cphy_1503
Thioredoxin-disulfide reductase; PFAM: glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_1945 thioredoxin-disulfide reductase.
   
 
  0.911
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.908
Cphy_1685
KEGG: chu:CHU_1814 hypothetical protein.
 
     0.908
Cphy_3260
KEGG: cbe:Cbei_1494 hypothetical protein.
  
 
 0.692
Cphy_3012
PFAM: SufBD protein; KEGG: cdf:CD3607 hypothetical protein.
  
 
 0.687
Cphy_3013
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD3608 ABC transporter, ATP-binding protein.
  
  
 0.668
Cphy_0181
PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: gtn:GTNG_2699 cysteine desulfhydrase.
  
 
0.528
Cphy_2179
Cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bpl:BURPS1106A_A2865 cysteine desulfurase.
  
 
0.528
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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