STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1686KEGG: cbf:CLI_0723 hypothetical protein. (359 aa)    
Predicted Functional Partners:
Cphy_1746
3-carboxymuconate cyclase-like protein; KEGG: cbe:Cbei_1278 hypothetical protein.
  
  
  0.914
Cphy_1703
KEGG: cbf:CLI_0723 hypothetical protein.
  
  
 
0.900
Cphy_1704
KEGG: cbf:CLI_0723 hypothetical protein.
  
  
 
0.900
Cphy_1471
PFAM: protein of unknown function DUF347; KEGG: rha:RHA1_ro08567 hypothetical protein.
  
     0.531
Cphy_1685
KEGG: chu:CHU_1814 hypothetical protein.
 
     0.470
Cphy_1641
Metallophosphoesterase; KEGG: afw:Anae109_3838 metallophosphoesterase.
  
     0.456
Cphy_1684
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.400
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.