STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1687PFAM: polysaccharide deacetylase; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like. (336 aa)    
Predicted Functional Partners:
Cphy_2105
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; KEGG: bay:RBAM_033790 XynA; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.945
Cphy_0405
PFAM: polysaccharide deacetylase; KEGG: cth:Cthe_1903 polysaccharide deacetylase.
  
     0.773
Cphy_0538
PFAM: polysaccharide deacetylase; KEGG: ckl:CKL_0600 predicted polysaccharide deacetylase.
  
     0.771
Cphy_1847
PFAM: polysaccharide deacetylase; KEGG: cdf:CD1430 putative exported polysaccharide deacetylase.
  
     0.769
Cphy_1688
PFAM: glycosyl hydrolase BNR repeat-containing protein; Two component regulator propeller; KEGG: sfu:Sfum_3494 hypothetical protein.
 
     0.545
Cphy_1799
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: sco:SCO5003 chinitase A precursor; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.426
Cphy_1163
Cellulase; PFAM: glycoside hydrolase family 5; KEGG: cth:Cthe_2872 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.416
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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