STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1694PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical glycine-rich protein. (1148 aa)    
Predicted Functional Partners:
Cphy_1695
PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 putative glycosyl transferase.
 
     0.757
Cphy_0718
KEGG: pin:Ping_0445 membrane protein involved in colicin uptake-like protein.
  
     0.674
Cphy_0721
KEGG: rno:305567 similar to Hypothetical protein CBG23547 (predicted).
 
  
 0.627
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
     0.592
Cphy_0824
KEGG: cth:Cthe_0359 hypothetical protein.
  
     0.540
Cphy_1891
PFAM: PT repeat-containing protein; KEGG: pfa:PFF0385c hypothetical protein.
 
 
 0.530
Cphy_2810
PFAM: glycosyl transferase family 2; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: amt:Amet_3406 glycosyl transferase, family 2.
 
     0.467
Cphy_0682
PFAM: Urea transporter; KEGG: ssp:SSP0266 hypothetical protein.
  
     0.448
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.