STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1696Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: amt:Amet_1479 transcriptional regulator, TrmB. (163 aa)    
Predicted Functional Partners:
Cphy_1697
Arsenite-activated ATPase ArsA; KEGG: fnu:FN1538 arsenical pump-driving ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase.
 
     0.765
Cphy_1698
PFAM: Anion-transporting ATPase; KEGG: fnu:FN1537 arsenical pump-driving ATPase.
 
     0.683
Cphy_2419
KEGG: amt:Amet_3947 hypothetical protein.
  
     0.522
Cphy_0119
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cbe:Cbei_2870 substrate-binding region of ABC-type glycine betaine transport system.
  
  
 0.501
Cphy_3470
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.494
Cphy_3365
PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58.
  
     0.491
Cphy_3141
KEGG: bth:BT_2346 iron-sulfur cluster-binding protein.
  
     0.471
Cphy_2420
KEGG: cpf:CPF_0333 hypothetical protein.
  
 
 0.463
Cphy_1695
PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 putative glycosyl transferase.
       0.451
Cphy_1603
PFAM: 4-vinyl reductase 4VR; KEGG: gur:Gura_0328 4-vinyl reductase, 4VR.
  
     0.430
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.