Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1713PFAM: coagulation factor 5/8 type domain protein; KEGG: mxa:MXAN_5269 S1D (lysyl endopeptidase) subfamily C-terminal domain protein. (454 aa)    
Predicted Functional Partners:
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
    0.643
Cphy_2919
PFAM: protein of unknown function DUF1565; KEGG: sde:Sde_2946 hypothetical protein.
  
    0.632
Cphy_1640
PFAM: glycoside hydrolase family 12; KEGG: sma:SAV2571 hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
    0.610
Cphy_1714
Glycoside hydrolase family 85; PFAM: coagulation factor 5/8 type domain protein; PKD domain containing protein; glycoside hydrolase family 85; KEGG: cpf:CPF_0285 endo-beta-N-acetylglucosaminidase.
 
    
0.556
Cphy_1163
Cellulase; PFAM: glycoside hydrolase family 5; KEGG: cth:Cthe_2872 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.550
Cphy_1873
PFAM: Carbohydrate binding family 6; APHP domain protein; SMART: cellulose binding type IV; Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein.
  
     0.546
Cphy_1800
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: cbe:Cbei_2830 glycoside hydrolase, family 18.
  
   
 0.541
Cphy_2105
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; KEGG: bay:RBAM_033790 XynA; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
    0.532
Cphy_1612
PFAM: Pectate lyase/Amb allergen; KEGG: cac:CAC0804 pectate lyase related protein, secreted.
  
  
 0.529
Cphy_3368
PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48.
  
    0.520
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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