STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1715PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease protein. (316 aa)    
Predicted Functional Partners:
Cphy_1716
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2050 sugar transport system (permease) (binding protein dependent transporter).
 
    0.942
Cphy_1709
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease protein.
  
  
 
0.906
Cphy_1717
PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
 
  
 0.903
Cphy_1723
PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
 
  
 0.804
Cphy_1708
KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
 
  
 0.778
Cphy_0696
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2724 binding-protein-dependent transport systems inner membrane component.
  
    0.777
Cphy_1710
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2338 ABC transporter, permease protein.
  
    0.777
Cphy_2570
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0795 putative multiple sugar transport system permease protein.
  
    0.777
Cphy_0930
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease.
  
    0.769
Cphy_1917
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BG11788 putative multiple sugar transport system permease protein.
  
    0.768
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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