Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1719PFAM: conserved hypothetical protein; KEGG: bha:BH0790 hypothetical protein. (427 aa)    
Predicted Functional Partners:
Cphy_1720
PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: gka:GK1902 alpha-D-mannosidase.
 
  
 0.848
Cphy_1723
PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
 
   
 0.788
Cphy_1717
PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
 
   
 0.782
Cphy_1714
Glycoside hydrolase family 85; PFAM: coagulation factor 5/8 type domain protein; PKD domain containing protein; glycoside hydrolase family 85; KEGG: cpf:CPF_0285 endo-beta-N-acetylglucosaminidase.
 
   
 0.735
Cphy_1715
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease protein.
 
   
 0.727
Cphy_1716
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2050 sugar transport system (permease) (binding protein dependent transporter).
 
   
 0.716
Cphy_1722
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpr:CPR_2056 DNA-binding response regulator, AraC family.
 
     0.708
Cphy_1708
KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
 
   
 0.671
Cphy_1718
PFAM: glycosidase PH1107-related; KEGG: bfs:BF1316 hypothetical protein.
       0.657
Cphy_2571
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease protein.
 
   
 0.632
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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