STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1723PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein. (506 aa)    
Predicted Functional Partners:
Cphy_1722
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cpr:CPR_2056 DNA-binding response regulator, AraC family.
 
     0.888
Cphy_1716
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2050 sugar transport system (permease) (binding protein dependent transporter).
 
   0.853
Cphy_2570
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0795 putative multiple sugar transport system permease protein.
 
   0.825
Cphy_1715
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease protein.
 
  
 0.804
Cphy_1710
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2338 ABC transporter, permease protein.
 
   0.803
Cphy_1719
PFAM: conserved hypothetical protein; KEGG: bha:BH0790 hypothetical protein.
 
   
 0.788
Cphy_1721
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cpr:CPR_2057 sensor histidine kinase.
 
     0.788
Cphy_0696
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2724 binding-protein-dependent transport systems inner membrane component.
 
   0.778
Cphy_2571
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease protein.
 
  
 0.777
Cphy_1709
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2339 ABC transporter, permease protein.
 
  
 0.773
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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