Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1724PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2413 MATE efflux family protein. (471 aa)    
Predicted Functional Partners:
Cphy_3762
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_2520 MATE efflux family protein.
  
   
 0.634
Cphy_1810
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbf:CLI_2014 MATE efflux family protein.
  
   
 0.614
Cphy_3019
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbe:Cbei_1760 MATE efflux family protein.
  
   
 0.589
Cphy_2060
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mac:MA1121 integral membrane protein.
  
     0.556
Cphy_3282
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0124 response regulator receiver protein.
  
     0.508
Cphy_1723
PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
       0.487
Cphy_1725
PFAM: Domain of unknown function DUF1801.
       0.482
Cphy_2569
PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE1030 putative multiple sugar/glycerol-3P transport system substrate-binding protein.
  
     0.471
Cphy_3139
Hypothetical protein.
  
     0.429
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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