STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1733KEGG: cth:Cthe_3021 Ech hydrogenase, subunit EchD, putative. (117 aa)    
Predicted Functional Partners:
Cphy_1730
NADH dehydrogenase (quinone); PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: cth:Cthe_3024 NADH dehydrogenase (quinone).
 
 
 0.998
Cphy_1735
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cth:Cthe_3019 4Fe-4S ferredoxin, iron-sulfur binding.
 
 0.996
Cphy_3558
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 0.993
Cphy_0088
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cbe:Cbei_4111 NADH dehydrogenase (quinone).
  
 0.991
Cphy_3804
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: csc:Csac_1863 NADH dehydrogenase (quinone).
  
 0.991
Cphy_1734
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: cth:Cthe_3020 NADH dehydrogenase (ubiquinone); Belongs to the complex I 49 kDa subunit family.
 
 
 0.976
Cphy_2056
KEGG: cbe:Cbei_1773 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein.
  
 0.972
Cphy_2329
PFAM: deoxynucleoside kinase; KEGG: lin:lin1817 similar to deoxyguanosine kinase/deoxyadenosine kinase(I) subunit.
   
 0.970
Cphy_1098
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cpf:CPF_0767 iron-sulfur cluster-binding protein, rieske family.
   
 
 0.968
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
   
 0.967
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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