STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1742Transcriptional regulator, CdaR; KEGG: cac:CA_P0121 Leu-rich protein family protein, YaeG (E.coli) homolog. (520 aa)    
Predicted Functional Partners:
Cphy_1743
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Acetoacetate decarboxylase; KEGG: cac:CAC1044 NADH:flavin oxidoreductase, possible NADH oxidase.
 
   
 0.908
Cphy_3734
KEGG: tte:TTE0157 hypothetical protein.
  
     0.686
Cphy_2638
Hypothetical protein; KEGG: cdf:CD1921 putative ethanolamine utilization/propanediol conserved hypothetical protein.
  
     0.643
Cphy_1744
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: drm:Dred_3003 short-chain dehydrogenase/reductase SDR.
 
   
 0.599
Cphy_1004
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: sgo:SGO_1596 transcription regulator.
  
    0.586
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.558
Cphy_0697
PFAM: extracellular solute-binding protein family 1; KEGG: lmf:LMOf2365_2031 ABC transporter, substrate-binding protein.
  
     0.557
Cphy_2213
PFAM: polysaccharide deacetylase; KEGG: cdf:CD2598 putative oligosaccharide deacetylase.
  
     0.548
Cphy_3475
PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein.
  
     0.529
Cphy_1063
Conserved hypothetical protein; KEGG: bth:BT_0447 S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase.
  
     0.526
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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