STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_17463-carboxymuconate cyclase-like protein; KEGG: cbe:Cbei_1278 hypothetical protein. (328 aa)    
Predicted Functional Partners:
Cphy_1704
KEGG: cbf:CLI_0723 hypothetical protein.
  
  
  0.920
Cphy_1703
KEGG: cbf:CLI_0723 hypothetical protein.
  
  
  0.915
Cphy_1686
KEGG: cbf:CLI_0723 hypothetical protein.
  
  
  0.914
Cphy_1712
KEGG: tpt:Tpet_1741 esterase/lipase-like protein.
  
    0.598
cutC-2
CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
    0.546
Cphy_3014
KEGG: cac:CAC2917 acetyl esterase family enzyme.
  
    0.471
Cphy_0661
KEGG: sus:Acid_2910 hypothetical protein.
  
    0.453
Cphy_1745
KEGG: lpf:lpl1156 methylated-DNA-[protein]-cysteine S-methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SMART: helix-turn-helix- domain containing protein AraC type.
       0.413
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
     
 0.401
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.