Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Cphy_1750PFAM: glycosyl hydrolase family 88; KEGG: cne:CNL06720 hypothetical protein. (319 aa)    
Predicted Functional Partners:
Cphy_3399
KEGG: sus:Acid_0267 hypothetical protein.
  
     0.663
Cphy_2567
PFAM: glycoside hydrolase family 28; KEGG: bvu:BVU_1985 glycoside hydrolase family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.628
Cphy_1301
PFAM: Pectinesterase; KEGG: cac:CAC3373 pectin methylesterase.
 
   
 0.625
Cphy_2736
PFAM: glycoside hydrolase family 28; KEGG: amt:Amet_0899 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.620
Cphy_2735
PFAM: lipolytic protein G-D-S-L family; KEGG: bld:BLi04100 hypothetical protein.
  
    0.579
Cphy_3217
PFAM: glycoside hydrolase family 28; KEGG: fjo:Fjoh_3114 glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.557
Cphy_2729
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cbe:Cbei_0450 xylose isomerase domain protein TIM barrel.
 
    0.513
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.486
Cphy_1618
KEGG: mgr:MGG_03407 hypothetical protein Pfam: Glyco_hydro_67N.
  
     0.452
Cphy_3080
KEGG: bsu:BG12861 hypothetical protein.
 
  
 0.445
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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