Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Cphy_1755PFAM: regulatory protein MarR; KEGG: ctc:CTC01897 transcriptional regulator, MarR family. (150 aa)    
Predicted Functional Partners:
Cphy_1756
PFAM: cyclase family protein; KEGG: ctc:CTC01896 putative polyketide cyclase.
 
    0.878
Cphy_1753
PFAM: aminotransferase class V; KEGG: cdf:CD3032 putative aminotransferase.
       0.521
Cphy_0119
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cbe:Cbei_2870 substrate-binding region of ABC-type glycine betaine transport system.
  
  
 0.519
Cphy_3470
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.517
Cphy_1754
KEGG: cdf:CD3032 putative aminotransferase.
       0.512
Cphy_2806
KEGG: cbf:CLI_0985 hypothetical protein.
  
     0.433
Cphy_2816
KEGG: cbf:CLI_0985 hypothetical protein.
  
     0.417
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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