STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1758PFAM: sodium:neurotransmitter symporter; KEGG: fnu:FN1989 sodium-dependent tyrosine transporter. (448 aa)    
Predicted Functional Partners:
Cphy_0373
TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dsy:DSY4985 hypothetical protein.
 
   
 0.812
Cphy_1461
PFAM: sodium:dicarboxylate symporter; KEGG: cdf:CD2693 putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.627
Cphy_1757
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ckl:CKL_3374 predicted transcriptional regulator.
       0.538
Cphy_1066
PFAM: Na+/H+ antiporter NhaC; KEGG: drm:Dred_1645 Na+/H+ antiporter NhaC.
 
   
 0.496
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.