STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1760KEGG: ctc:CTC01924 membrane spanning protein. (208 aa)    
Predicted Functional Partners:
Cphy_1761
PFAM: cyclic nucleotide-binding; KEGG: ctc:CTC01923 catabolite gene activator.
 
   
 0.878
Cphy_1759
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ctc:CTC01925 2-haloalkanoic acid dehalogenase I.
 
     0.788
Cphy_2420
KEGG: cpf:CPF_0333 hypothetical protein.
  
     0.725
Cphy_2421
KEGG: amt:Amet_3944 membrane protein.
  
     0.680
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
  
     0.653
Cphy_3310
Hypothetical protein; KEGG: aor:AO090138000086 predicted protein Pfam: Glyco_hydro_49 Glyco_hydro_28 Zn_clus Fungal_trans BCNT PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2; Belongs to the glycosyl hydrolase 28 family.
  
     0.505
Cphy_1432
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ckl:CKL_0584 hypothetical protein.
  
     0.492
Cphy_3139
Hypothetical protein.
  
     0.482
Cphy_2164
Hypothetical protein.
  
     0.440
Cphy_2560
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC3491 protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family).
  
     0.423
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.