Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1761PFAM: cyclic nucleotide-binding; KEGG: ctc:CTC01923 catabolite gene activator. (205 aa)    
Predicted Functional Partners:
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
   
 0.952
Cphy_1760
KEGG: ctc:CTC01924 membrane spanning protein.
 
   
 0.885
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.728
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.711
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.708
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.694
Cphy_2421
KEGG: amt:Amet_3944 membrane protein.
  
     0.580
Cphy_1759
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ctc:CTC01925 2-haloalkanoic acid dehalogenase I.
       0.541
Cphy_2420
KEGG: cpf:CPF_0333 hypothetical protein.
  
  
 0.529
Cphy_2164
Hypothetical protein.
 
   
 0.499
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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