STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1762Putative transcriptional regulator, TetR family; KEGG: bha:BH0317 hypothetical protein. (194 aa)    
Predicted Functional Partners:
Cphy_1763
PFAM: FAD dependent oxidoreductase; KEGG: mhu:Mhun_2065 FAD dependent oxidoreductase.
 
   
 0.815
Cphy_1764
PFAM: protein of unknown function DUF1697; KEGG: det:DET1387 hypothetical protein.
 
     0.594
Cphy_1761
PFAM: cyclic nucleotide-binding; KEGG: ctc:CTC01923 catabolite gene activator.
     
 0.432
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.