STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1766PFAM: TfoX domain protein; KEGG: cbf:CLI_0805 TfoX domain protein. (108 aa)    
Predicted Functional Partners:
Cphy_1765
PFAM: isochorismatase hydrolase; KEGG: cth:Cthe_1178 isochorismatase hydrolase.
  
    0.780
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
   
   0.765
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cth:Cthe_2889 phosphoribosyl-AMP cyclohydrolase; In the C-terminal section; belongs to the PRA-PH family.
       0.548
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.543
Cphy_1848
KEGG: cbf:CLI_2295 transcriptional regulator, MerR family.
 
     0.507
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.503
Cphy_0280
KEGG: cac:CAC3435 hypothetical protein.
  
     0.493
Cphy_2560
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC3491 protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family).
  
     0.491
Cphy_1764
PFAM: protein of unknown function DUF1697; KEGG: det:DET1387 hypothetical protein.
       0.456
Cphy_1492
PFAM: YheO domain protein; KEGG: efa:EF0096 hypothetical protein.
  
     0.431
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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