Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cphy_1777KEGG: swo:Swol_1838 hypothetical protein. (331 aa)    
Predicted Functional Partners:
Cphy_1778
KEGG: dsy:DSY1202 hypothetical protein.
 
     0.674
Cphy_3237
KEGG: btk:BT9727_4626 hypothetical protein.
  
     0.642
Cphy_1141
KEGG: amt:Amet_3459 hypothetical protein.
 
     0.581
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.534
Cphy_2289
PFAM: peptidase M23B; KEGG: bcl:ABC2951 metalloendopeptidase.
  
     0.490
Cphy_1652
Peptidoglycan-binding LysM; PFAM: glycoside hydrolase family 18; Peptidoglycan-binding LysM; SMART: chitinase II; KEGG: cno:NT01CX_1510 spore peptidogylcan hydrolase.
  
     0.463
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.437
Cphy_1649
KEGG: cbe:Cbei_4140 hypothetical protein.
  
     0.436
Cphy_1650
KEGG: cbf:CLI_1187 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
 
     0.406
Cphy_1776
KEGG: cbe:Cbei_2858 hypothetical protein.
       0.401
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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