STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1780PFAM: conserved hypothetical protein; KEGG: cbf:CLI_0435 hypothetical protein. (344 aa)    
Predicted Functional Partners:
Cphy_1781
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: cdf:CD1796 putative nitrite and sulfite reductase subunit.
       0.546
Cphy_1783
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: cdf:CD1798 LysR-family transcriptional regulator.
 
     0.503
Cphy_1779
Anaerobic cobalt chelatase; PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; anaerobic cobalt chelatase; KEGG: tde:TDE2656 cobalt chelatase.
       0.415
Cphy_2029
Hypothetical protein; KEGG: amt:Amet_3803 copper amine oxidase domain protein.
  
     0.410
Cphy_1970
KEGG: bra:BRADO1315 hypothetical protein; putative signal peptide.
  
     0.402
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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