STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1796PFAM: beta-lactamase domain protein; KEGG: cbe:Cbei_3495 beta-lactamase domain protein. (230 aa)    
Predicted Functional Partners:
Cphy_3470
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
 0.856
Cphy_1868
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: cbf:CLI_0245 pyridine nucleotide-disulphide oxidoreductase family protein.
  
 0.589
Cphy_2553
KEGG: mac:MA2899 hypothetical protein.
  
   
 0.533
Cphy_2164
Hypothetical protein.
  
     0.510
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
 
 0.487
Cphy_1551
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: det:DET0533 HAD-superfamily hydrolase, subfamily IA.
 
    0.474
Cphy_1662
PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3138 cupin 2, conserved barrel domain protein.
  
     0.456
Cphy_1872
Putative homoserine kinase type II (protein kinase fold)-like protein; KEGG: btk:BT9727_0548 hypothetical protein.
  
   
 0.447
Cphy_2576
Acetyltransferase; KEGG: rbe:RBE_0461 acetyltransferase.
  
     0.445
Cphy_0676
Hypothetical protein; KEGG: bcz:BCZK1145 acetyltransferase, GNAT family.
  
     0.443
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.