STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cphy_1806TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: cbf:CLI_1148 putative conserved repeat domain protein. (621 aa)    
Predicted Functional Partners:
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.623
Cphy_2969
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: cdf:CD2920 phage protein.
 
     0.578
Cphy_0082
PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_2324 protein of unknown function DUF1540.
  
     0.535
Cphy_2962
KEGG: cdf:CD2913 phage protein.
  
     0.529
Cphy_2988
KEGG: sgl:SG0930 hypothetical protein.
 
    0.497
Cphy_2965
KEGG: cno:NT01CX_2174 scaffold protein.
  
     0.495
Cphy_0785
KEGG: cdf:CD2910 phage protein.
 
 
   0.456
Cphy_1054
KEGG: csc:Csac_0437 hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
  
 
   0.453
Cphy_0994
KEGG: dsy:DSY1050 hypothetical protein.
  
     0.449
Cphy_2970
TIGRFAM: phage portal protein, SPP1 family; PFAM: portal protein SPP1; KEGG: lga:LGAS_0668 phage portal protein, SPP1 GP6-like.
  
     0.444
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.