STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1808PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cac:CAC0669 hypothetical protein. (71 aa)    
Predicted Functional Partners:
Cphy_0083
PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.
  
 
 0.805
Cphy_3786
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_3119 flavin reductase-like, FMN-binding.
  
 
 0.770
Cphy_1790
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cbe:Cbei_3628 DNA binding domain, excisionase family.
  
     0.671
Cphy_1056
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
  
     0.616
Cphy_1371
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrin-III C-methyltransferase.
  
  
 0.606
Cphy_1787
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrin-III C-methyltransferase.
  
  
 0.606
Cphy_1055
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
  
     0.586
Cphy_1513
PFAM: regulatory protein TetR; KEGG: cac:CAC1668 transcriptional regulator, AcrR family.
  
     0.541
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.534
hcp-2
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.534
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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