STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1835KEGG: bha:BH1004 putative ABC-2 type transport system permease protein. (534 aa)    
Predicted Functional Partners:
Cphy_1836
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter (ATP-binding protein).
 
 
 0.964
Cphy_1837
PFAM: regulatory protein TetR; KEGG: ckl:CKL_3748 transcriptional regulator.
 
     0.661
Cphy_1634
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bld:BLi00349 ABC-2 type transport system ATP-binding protein.
 
 
 0.510
Cphy_1432
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ckl:CKL_0584 hypothetical protein.
  
    0.477
Cphy_2320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lbu:LBUL_1588 ABC-type multidrug transport system, ATPase component.
 
 
 0.455
Cphy_3884
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC2932 ABC-type MDR transporter, ATPase component.
 
 
 0.454
Cphy_0076
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bay:RBAM_030540 putative multidrug ABC transporter, ATPase component.
 
 
 0.446
Cphy_0186
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1248 ABC transporter, ATP-binding protein.
 
 
 0.444
Cphy_3598
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0247 ABC transporter ATP-binding protein.
 
 
 0.440
Cphy_1834
Hypothetical protein.
       0.430
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.