Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1837PFAM: regulatory protein TetR; KEGG: ckl:CKL_3748 transcriptional regulator. (202 aa)    
Predicted Functional Partners:
Cphy_1835
KEGG: bha:BH1004 putative ABC-2 type transport system permease protein.
 
     0.661
Cphy_1836
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1003 ABC transporter (ATP-binding protein).
 
     0.660
Cphy_3621
PFAM: regulatory protein TetR; KEGG: cbh:CLC_1236 transcriptional regulator, TetR family.
  
     0.645
Cphy_1635
KEGG: bca:BCE_1989 membrane protein, putative.
 
     0.406
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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