STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1838PFAM: regulatory protein TetR; KEGG: cbf:CLI_1106 transcriptional regulator, TetR family. (195 aa)    
Predicted Functional Partners:
Cphy_1839
KEGG: mst:Msp_0843 hypothetical protein.
  
    0.784
Cphy_1840
Multimeric flavodoxin WrbA-like protein; KEGG: cpf:CPF_1044 hypothetical protein.
       0.711
Cphy_1841
Hypothetical protein; KEGG: cac:CAC0755 multimeric flavodoxin WrbA family protein, diverged or disrupted.
       0.705
Cphy_3200
PFAM: aminoglycoside phosphotransferase; KEGG: syn:sll1119 hypothetical protein.
  
     0.460
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.