STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1842PFAM: GCN5-related N-acetyltransferase; KEGG: cmi:CMM_0312 putative acetyltransferase. (195 aa)    
Predicted Functional Partners:
Cphy_1843
PFAM: protein of unknown function DUF402; KEGG: oih:OB0349 hypothetical protein.
       0.678
Cphy_1844
PFAM: regulatory protein MarR; KEGG: bcz:pE33L466_0362 transcriptional regulator, MarR family.
  
    0.431
Cphy_1840
Multimeric flavodoxin WrbA-like protein; KEGG: cpf:CPF_1044 hypothetical protein.
       0.406
Cphy_1841
Hypothetical protein; KEGG: cac:CAC0755 multimeric flavodoxin WrbA family protein, diverged or disrupted.
       0.406
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.402
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.