STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1855KEGG: cpf:CPF_1105 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Cphy_1856
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ctc:CTC02471 putative transcription regulator.
 
     0.917
Cphy_1853
KEGG: cth:Cthe_1547 hypothetical protein.
 
     0.912
Cphy_1854
KEGG: ctc:CTC02470 hypothetical protein.
 
     0.883
Cphy_2845
KEGG: cbf:CLI_0727 hypothetical protein.
  
     0.416
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.