Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Cphy_1856Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ctc:CTC02471 putative transcription regulator. (185 aa)    
Predicted Functional Partners:
Cphy_1854
KEGG: ctc:CTC02470 hypothetical protein.
 
     0.910
Cphy_1855
KEGG: cpf:CPF_1105 hypothetical protein.
 
     0.907
Cphy_1853
KEGG: cth:Cthe_1547 hypothetical protein.
 
     0.888
Cphy_1271
KEGG: tde:TDE1860 hypothetical protein.
  
     0.486
Cphy_1441
PFAM: protein of unknown function DUF1349; KEGG: sco:SCO1870 hypothetical protein.
  
     0.477
Cphy_1434
PFAM: protein of unknown function DUF1349; KEGG: sma:SAV6390 hypothetical protein.
  
     0.461
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.444
Cphy_0404
KEGG: cdf:CD0628 hypothetical protein.
 
     0.421
Cphy_2845
KEGG: cbf:CLI_0727 hypothetical protein.
  
     0.403
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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