Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1866KEGG: rci:RCIX1074 hypothetical protein. (399 aa)    
Predicted Functional Partners:
Cphy_2411
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein.
  
     0.526
Cphy_1864
PFAM: regulatory protein TetR; KEGG: cbe:Cbei_4692 transcriptional regulator, TetR family.
 
     0.515
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.503
Cphy_3858
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0682 extracellular solute-binding protein, family 1.
  
     0.498
Cphy_3409
PFAM: extracellular solute-binding protein family 1; KEGG: tte:TTE2345 sugar-binding periplasmic proteins/domains.
  
     0.484
Cphy_1867
Hypothetical protein.
       0.466
Cphy_0780
KEGG: cbe:Cbei_3228 hypothetical protein.
  
     0.463
Cphy_1865
PFAM: NADPH-dependent FMN reductase; KEGG: mla:Mlab_1736 hypothetical protein.
       0.463
Cphy_0077
PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH.
  
     0.450
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
  
     0.427
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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