STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1877PFAM: glycoside hydrolase family 31; KEGG: bad:BAD_1599 alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family. (797 aa)    
Predicted Functional Partners:
Cphy_1874
Kojibiose phosphorylase; Catalyzes the reversible phosphorolysis of nigerose. Also shows a weak activity on kojibiose; Belongs to the glycosyl hydrolase 65 family.
 
   
 0.706
Cphy_3313
Kojibiose phosphorylase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: ana:all4989 hypothetical protein.
 
   
 0.665
Cphy_1876
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_1439 regulatory protein, LacI.
       0.608
Cphy_1878
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer.
       0.588
Cphy_1879
PFAM: extracellular solute-binding protein family 1; KEGG: cdi:DIP0534 putative sugar-binding secreted protein.
 
     0.493
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.409
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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