Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1882SMART: Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein. (1410 aa)    
Predicted Functional Partners:
Cphy_1775
S-layer domain protein; PFAM: coagulation factor 5/8 type domain protein; S-layer domain protein; KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein.
 
     0.771
Cphy_1799
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: sco:SCO5003 chinitase A precursor; Belongs to the glycosyl hydrolase 18 family.
  
     0.764
Cphy_3309
PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase.
 
     0.752
Cphy_3368
PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48.
  
     0.686
Cphy_1642
KEGG: ani:AN4890.2 hypothetical protein.
  
     0.625
Cphy_1640
PFAM: glycoside hydrolase family 12; KEGG: sma:SAV2571 hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.604
Cphy_1887
Hypothetical protein; KEGG: shn:Shewana3_1825 ATPase-like protein.
  
     0.544
Cphy_1880
Fructose-bisphosphate aldolase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1344 sugar ABC transporter, permease protein.
       0.531
Cphy_1881
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF1343 sugar ABC transporter, permease protein.
       0.531
Cphy_2215
PFAM: Chloramphenicol phosphotransferase family protein; KEGG: ppr:PBPRA2780 hypothetical protein.
  
     0.521
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.