STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1887Hypothetical protein; KEGG: shn:Shewana3_1825 ATPase-like protein. (870 aa)    
Predicted Functional Partners:
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.703
Cphy_1308
PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein.
  
     0.666
Cphy_1882
SMART: Parallel beta-helix repeat; KEGG: sco:SCO7037 secreted protein.
  
     0.544
Cphy_3203
Hypothetical protein; KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, putative Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH.
 
     0.507
Cphy_1911
Hypothetical protein; KEGG: mvn:Mevan_0087 superfamily I DNA and RNA helicase and helicase subunits-like protein.
       0.497
Cphy_1886
PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: gtn:GTNG_3106 cell wall lytic activity.
       0.450
Cphy_1358
Hypothetical protein; KEGG: sma:SAV1809 putative dipeptidase.
 
     0.449
Cphy_1957
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: bce:BC4322 ComE operon protein 3.
       0.433
Cphy_3309
PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase.
  
     0.416
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.405
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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